Published Workflows | chanaka | RSEM workflow for V156
Import workflow

Galaxy Workflow ' RSEM workflow for V156'

Annotation:

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Step 3: Input dataset
select at runtime
Step 4: Input dataset
select at runtime
Step 5: PopGenIE random fastq extract tool
Output dataset 'output' from step 1
Output dataset 'output' from step 2
Step 6: PopGenIE random fastq extract tool
Output dataset 'output' from step 3
Output dataset 'output' from step 4
Step 7: FASTQ Groomer
Output dataset 'output1' from step 5
Sanger
Hide Advanced Options
Step 8: FASTQ Groomer
Output dataset 'output2' from step 5
Sanger
Hide Advanced Options
Step 9: FASTQ Groomer
Output dataset 'output1' from step 6
Sanger
Hide Advanced Options
Step 10: FASTQ Groomer
Output dataset 'output2' from step 6
Sanger
Hide Advanced Options
Step 11: Trim sequences
Output dataset 'output_file' from step 7
10
90
Step 12: Trim sequences
Output dataset 'output_file' from step 8
10
90
Step 13: Trim sequences
Output dataset 'output_file' from step 9
10
90
Step 14: Trim sequences
Output dataset 'output_file' from step 10
10
90
Step 15: RSEM-1.17
FASTQ
phred33 qualities
Paired End Reads
Output dataset 'output' from step 11
Output dataset 'output' from step 12
No
-1
0
no
no
no
no
1
1000
2
99999999
200
25
1
Step 16: RSEM-1.17
FASTQ
phred33 qualities
Paired End Reads
Output dataset 'output' from step 13
Output dataset 'output' from step 14
No
-1
0
no
no
no
no
1
1000
2
99999999
200
25
1