Published Pages | chanaka | Upload file from UPPMAX to Galaxy

1.) First we need to create Galaxy user.If you don't have a PopGenIE Galaxy account,please go to the http://galaxy.popgenie.org:8080/user/create and create new user account.Here I created user using "uppmaxftp@url.com" email address.

Create Galaxy user

2.)  Now we need to login to the UPPMAX server.Once we logged in to the UPPMAX we will see following screen.

UPPMAX logged in

3.) Now I am going to upload UPPMAX file to PopGenIE Galaxy using newly created Galaxy account (uppmaxftp@url.com).

 a.)First we need to login to the FTP server.
chanaka@kalkyl4 Thursaday]$ ftp
ftp> open spruce.plantphys.umu.se
Connected to spruce.plantphys.umu.se (130.239.4.42).
220-Welcome to Popgenie FTP server
220 ProFTPD 1.3.4a Server (spruce.plantphys.umu.se) [::ffff:130.239.4.42]
Name (spruce.plantphys.umu.se:chanaka): uppmaxftp@url.com
331 Password required for uppmaxftp@url.com
Password:
230 User uppmaxftp@url.com logged in
Remote system type is UNIX.
Using binary mode to transfer files.
 b.) Successfully logged in,Then we can transfer files.I'm going to upload NC_012125.1.fasta file.
ftp> put NC_012125.1.fasta
local: NC_012125.1.fasta remote: NC_012125.1.fasta
227 Entering Passive Mode (130,239,4,42,128,138).
150 Opening BINARY mode data connection for NC_012125.1.fasta
226 Transfer complete
4902138 bytes sent in 0.47 secs (10426.86 Kbytes/sec)
ftp> bye
221 Goodbye.
[chanaka@kalkyl4 Thursaday]$

FTP transfer

3.) Now get back to http://galaxy.popgenie.org and login to uppmaxftp@url.com account.Then Get Data-> Upload File you will see "NC_012125.1.fasta" file.

FTP uploaded files

4.) Done ! Here is the Screencast for above steps