Published Histories | chanaka | Send Data to Popgenie
Import history

Galaxy History ' Send Data to Popgenie'


DatasetAnnotation
3: View data in Popgenie GBrowse
200 lines
format: gtf, database: Populus_unmasked
1.Seqname2.Source3.Feature4.Start5.End6.Score7.Strand8.Frame9.Attributes
scaffold_1Ptrichocarpav2_0exon1263212650.+.gene_name "POPTR_0001s00200"; transcript_id "POPTR_0001s00200.1";
scaffold_1Ptrichocarpav2_05UTR1263212638.+.gene_name "POPTR_0001s00200"; transcript_id "POPTR_0001s00200.1";
scaffold_1Ptrichocarpav2_0CDS1263912650.+0gene_name "POPTR_0001s00200"; transcript_id "POPTR_0001s00200.1";
scaffold_1Ptrichocarpav2_0exon1276812891.+.gene_name "POPTR_0001s00200"; transcript_id "POPTR_0001s00200.1";
scaffold_1Ptrichocarpav2_0CDS1276812891.+0gene_name "POPTR_0001s00200"; transcript_id "POPTR_0001s00200.1";
scaffold_1Ptrichocarpav2_0exon1311713226.+.gene_name "POPTR_0001s00200"; transcript_id "POPTR_0001s00200.1";
None
4: Sample output from RNASeq Analysis
100 lines
format: tabular, database: Populus_unmasked
1
POPTR_0001s04350
POPTR_0001s28170
POPTR_0001s35530
POPTR_0001s45510
POPTR_0001s10980
POPTR_0001s30020
None
5: Cuffdiff on data 14, data 16, and data 29: gene expression
9,193 lines
format: tabular, database: Populus_unmasked
Info: cuffdiff v1.3.0 (3022)
cuffdiff -q -p 4 -c 1000 --FDR 0.050000 /mnt/spruce/storage/ftp/database/files/001/dataset_1092.dat /mnt/spruce/storage/ftp/database/files/001/dataset_1077.dat /mnt/spruce/storage/ftp/database/files/001/dataset_1079.dat
1234567891011121314
test_idgene_idgenelocussample_1sample_2statusvalue_1value_2log2(fold_change)test_statp_valueq_valuesignificant
XLOC_000001XLOC_000001POPTR_0001s00300scaffold_1:168837-170022q1q2NOTEST23.6144108.1062.19471-1.286110.1984041no
XLOC_000002XLOC_000002POPTR_0001s00360scaffold_1:251869-255906q1q2NOTEST39.1898261.2222.73672-1.825730.06789141no
XLOC_000003XLOC_000003POPTR_0001s00390scaffold_1:303224-303505q1q2NOTEST55.2562478.5693.11452-1.166740.2433151no
XLOC_000004XLOC_000004POPTR_0001s00410scaffold_1:310597-311584q1q2NOTEST3.755771144.718.25165-3.10090.001929351no
XLOC_000005XLOC_000005POPTR_0001s00500scaffold_1:399099-399507q1q2NOTEST16.3293140.1673.10161-1.156690.2473991no
6: Cut on data 5
9,193 lines
format: tabular, database: Populus_unmasked
1
gene
POPTR_0001s00300
POPTR_0001s00360
POPTR_0001s00390
POPTR_0001s00410
POPTR_0001s00500
7: Select first on data 6
1,000 lines
format: tabular, database: Populus_unmasked
1
gene
POPTR_0001s00300
POPTR_0001s00360
POPTR_0001s00390
POPTR_0001s00410
POPTR_0001s00500
8: Select first on data 7
100 lines
format: tabular, database: Populus_unmasked
1
gene
POPTR_0001s00300
POPTR_0001s00360
POPTR_0001s00390
POPTR_0001s00410
POPTR_0001s00500