Published Workflows | chanaka | Cufflinks Cuffcompare and Cuffdiff
Import workflow

Galaxy Workflow ' Cufflinks Cuffcompare and Cuffdiff'

Annotation:

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Step 3: Cufflinks
Output dataset 'output' from step 1
300000
0.05
0.05
No
No
No
No
Step 4: Cufflinks
Output dataset 'output' from step 2
300000
0.05
0.05
No
No
No
No
Step 5: Cuffcompare
Output dataset 'assembled_isoforms' from step 3
Additional GTF Input Files
Additional GTF Input Files 1
Output dataset 'assembled_isoforms' from step 4
Yes
select at runtime
False
No
Step 6: Cuffdiff
Output dataset 'transcripts_combined' from step 5
No
Output dataset 'output' from step 1
Output dataset 'output' from step 2
0.05
1000
No
No
No