Published Histories | chanaka | spruceCLC015_Repeats
Import history

Galaxy History ' spruceCLC015_Repeats'


DatasetAnnotation
1: CLC015_Repeats_filtered.gff
~4,000,000 lines
format: gff, database: ?
Info: uploaded gff file
1.Seqname2.Source3.Feature4.Start5.End6.Score7.Strand8.Frame9.Group
##gff-version 2
##date 2012-03-08
##sequence-region CLC015_1000bp.fa
contig_10002407RepeatMaskersimilarity1313424.1-.Target Motif:Copia18-PTR_I-int 1687 1815
contig_10007583RepeatMaskersimilarity77590224.0-.Target Motif:Copia6-PTR_I-int 3193 3317
contig_10009443RepeatMaskersimilarity66962 9.4+.Target Motif:LSU-rRNA_Ath 713 1594
7: Cut on data 6
~4,000,000 lines
format: tabular, database: ?
123456789
##gff-version 2........
##date 2012-03-08........
##sequence-region CLC015_1000bp.fa........
contig_10002407RepeatMaskersimilarity1313424.1-.Target Motif:Copia18-PTR_I-int16871815
contig_10007583RepeatMaskersimilarity77590224.0-.Target Motif:Copia6-PTR_I-int31933317
contig_10009443RepeatMaskersimilarity66962 9.4+.Target Motif:LSU-rRNA_Ath7131594
8: CLC015_Repeats.gff
~4,000,000 lines
format: gtf, database: ?
Info: uploaded gff file
1.Seqname2.Source3.Feature4.Start5.End6.Score7.Strand8.Frame9.Attributes
##gff-version 2
##date 2012-03-08
##sequence-region CLC015_1000bp.fa
contig_10002407RepeatMaskersimilarity1313424.1-.Target "Motif:Copia18-PTR_I-int" 1687 1815
contig_10007583RepeatMaskersimilarity77590224.0-.Target "Motif:Copia6-PTR_I-int" 3193 3317
contig_10009443RepeatMaskersimilarity66962 9.4+.Target "Motif:LSU-rRNA_Ath" 713 1594
9: CLCh001_Repeats.gff
~7,900,000 lines
format: gff, database: ?
Info: uploaded gff file
1.Seqname2.Source3.Feature4.Start5.End6.Score7.Strand8.Frame9.Group
##gff-version 2
##date 2012-03-14
##sequence-region CLCh001_c0401_0600.fa
contig_10000014RepeatMaskersimilarity148037.2-.Target "Motif:Gypsy10-PTR_I-int" 1676 1983
contig_10000020RepeatMaskersimilarity22555634.9-.Target "Motif:Gypsy11-PTR_I-int" 2444 2775
contig_10000027RepeatMaskersimilarity12022933.6+.Target "Motif:Copia13-PTR_I-int" 3647 3756
11: GTF_to_GFF3 on data 8
0 line, 1 comments
format: gff3, database: ?
1.Seqid
##gff-version 3
12: PopGenIE String Replace on data 1
~120,000 lines
format: gff, database: ?
1.Seqname2.Source3.Feature4.Start5.End6.Score7.Strand8.Frame9.Group
##gff-version 2
##date 2012-03-08
##sequence-region CLC015_1000bp.fa
contig_10002407RepeatMaskersimilarity1313424.1-.Target=Motif:Copia18-PTR_I-int 1687 1815
contig_10007583RepeatMaskersimilarity77590224.0-.Target=Motif:Copia6-PTR_I-int 3193 3317
contig_10009443RepeatMaskersimilarity66962 9.4+.Target=Motif:LSU-rRNA_Ath 713 1594